NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0135210_1008821

Scaffold Ga0135210_1008821


Overview

Basic Information
Taxon OID3300029345 Open in IMG/M
Scaffold IDGa0135210_1008821 Open in IMG/M
Source Dataset NameMarine harbor viral communities from the Indian Ocean - SCH1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMichigan State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)877
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location
Location NameIndian Ocean
CoordinatesLat. (o)1.26600833Long. (o)103.8333333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097128Metagenome104N
F104969Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0135210_10088212F104969N/AMKNKKEREILSIEILYDYKEELDELVDSEDFNRLMFEEAVATIENALDKKRETARVFYIPNLDCSVILEQRNFTKVLDTAIKFYEQQEEYDQCAKLVTLKKRVNGPKKRNKRSS
Ga0135210_10088213F097128N/AMDQKKEIKEALEKILGSNITLRDDGSDPVDELKEDFTKLIELYESVWKRQNDLLEIQGLDFTSYDENYFRLVEGFIHFCFEGVAADAILFYIYSRKDNDGTLHPFMDSKGEEHKFESLSDRDWETKM
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