NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0135210_1014194

Scaffold Ga0135210_1014194


Overview

Basic Information
Taxon OID3300029345 Open in IMG/M
Scaffold IDGa0135210_1014194 Open in IMG/M
Source Dataset NameMarine harbor viral communities from the Indian Ocean - SCH1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMichigan State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)754
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location
Location NameIndian Ocean
CoordinatesLat. (o)1.26600833Long. (o)103.8333333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050375Metagenome / Metatranscriptome145N
F054772Metagenome / Metatranscriptome139Y
F055653Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0135210_10141941F050375AGGMNKFGTIGPYDCDGNQVEMDWVWSDEYDEAEIVEMRFDGTKVEINNVAEWIVDSLFQEVPYDELMVA
Ga0135210_10141942F054772N/AMRNVIHYTDEYFDLIDTVLDLKIDEATRNDLATKIFKAIAAGELVAYEGRDEGNVHGKGKLIES
Ga0135210_10141943F055653GAGGLKMQSYIQAKEMREMIKDINNPQFNIVNVPFDERVDCLNQVIDARDNGLITQKESLDIVCNQWYIQFKASKLK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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