NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0135210_1034859

Scaffold Ga0135210_1034859


Overview

Basic Information
Taxon OID3300029345 Open in IMG/M
Scaffold IDGa0135210_1034859 Open in IMG/M
Source Dataset NameMarine harbor viral communities from the Indian Ocean - SCH1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMichigan State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)558
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location
Location NameIndian Ocean
CoordinatesLat. (o)1.26600833Long. (o)103.8333333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067234Metagenome126Y
F074166Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0135210_10348592F067234AGGAGMRKLPMFQEQLENFIYHHIHAWAEDYVAQNKADYPDVTLYDSMADEFRTFIGDLEHRFEEEIKPRFGGV
Ga0135210_10348593F074166N/ARKKMREGLKQHVTTLLSNYLEDLRYWCEVHEADGINSVTAGTPPFDTLEDANAYRVMVKAVLKEFKDA

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