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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300029349 Open in IMG/M |
| Scaffold ID | Ga0238435_100041 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Iron Gate Dam, Klamath Basin, California, USA - IR103 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Oregon State University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 38701 |
| Total Scaffold Genes | 116 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 85 (73.28%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Klamath Basin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Iron Gate Dam, Klamath Basin, California | |||||||
| Coordinates | Lat. (o) | 41.93 | Long. (o) | -122.44 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000325 | Metagenome / Metatranscriptome | 1296 | Y |
| F007110 | Metagenome / Metatranscriptome | 357 | Y |
| F008812 | Metagenome / Metatranscriptome | 327 | Y |
| F035281 | Metagenome / Metatranscriptome | 172 | Y |
| F036210 | Metagenome / Metatranscriptome | 170 | Y |
| F041150 | Metagenome / Metatranscriptome | 160 | Y |
| F054798 | Metagenome / Metatranscriptome | 139 | N |
| F056376 | Metagenome / Metatranscriptome | 137 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0238435_100041111 | F008812 | AGGAG | MIQWIGVIIALLGLAYNGVKDYQKGDIKIPQLPQKQVLTKPVYPVQYCLMAYDPNVNKVFYLHENGQWHDYAPQQRRYSTTQEVRQDQGQGQATLGNSYGTQGASGYYYGQQAQAAANTTRR |
| Ga0238435_100041115 | F000325 | AGGAG | MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLDNGCYAEQTEKQYKNARTAGFANVITEKHKIRAMILDAKRREKSIRWHERGDWFLNGELDLEYVANVTWACESILADGDTLPNMWFYTHIYDSRLVSLEKYMAVYASVHDDNDMNEAKSKGFKLFAWCDSDMKIAPKRPKHKAKADLWRQALPKLVVLNAAKFVVCPEIRRGRSVITCTGTKDSISCDMCVKGLANVLFPAH |
| Ga0238435_1000414 | F007110 | AGGAG | MLCRYCQSMIDSDRLEFLQDYNRPLVCKECSTEQRAVGFMDWGHKTAPSLVMVPANANETIRILNRANRRAR |
| Ga0238435_10004172 | F054798 | N/A | MIYLYLNETEKLAEIVSELVKLGMGVVAELHGNKWHIEVTK |
| Ga0238435_10004173 | F041150 | GGAGG | MGMGSFAVGSFVIEYKDLKEICPNEIKSIEQAKYFRDVGWNAIGRWLAWDDPDNIKEELYIAVEEDKSQPTIRLEKDIDSIVEDIFQEYEKLITALKNSFNKKTKLTLYFDSYDEEGGDRYDNPGDKDGCIFCVDGMVQLTPAGKKFKDIITERKWTQFG |
| Ga0238435_10004177 | F056376 | AGG | MNLIKCFSNVIGHKEAQELVIDLNQMKSAKSEDFYIEYDKSKDYYQDDTYIVVGNVTANDWDELNLDMDFMQVDLI |
| Ga0238435_10004193 | F035281 | AGGAG | MKNFVIAAMIVLGMVGSSYGGECVNGSCLLRSRVVNVTREVVSVPVTVTRRTVEATRNVGRKTVNRVRNIVR |
| Ga0238435_10004195 | F036210 | GAGG | MKTRYLNARNRPEIQRKYIDHILGTLDFMQIKDRLRDYFELEKDKESNASLEAEIRQEAPEVLVDNWEDLDEPSTLTKKEEFHHA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |