Basic Information | |
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Taxon OID | 3300029362 Open in IMG/M |
Scaffold ID | Ga0243852_1000001 Open in IMG/M |
Source Dataset Name | Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 053_3_13_stool_1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Institute for Genome Sciences, University of Maryland School of Medicine |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 289309 |
Total Scaffold Genes | 284 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 264 (92.96%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Baltimore | |||||||
Coordinates | Lat. (o) | 39.28846264 | Long. (o) | -76.62594594 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F095494 | Metagenome | 105 | N |
F096287 | Metagenome | 105 | N |
Protein ID | Family | RBS | Sequence |
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Ga0243852_100000118 | F095494 | GGAGG | VSDPKEKEVQAILQAIDYGHLPPRETQRRLLNIIQAEAARTDAPTDETKIHTCMDLLERLQGEQKPIAPARVDALRQHIAAAHQKNERKRQKRKKIMAAAACSAAAIAVAFAVSHPLLWYANWTTSDEQQHFVTSHEIAIEMLETAVADPMLPSGDTVEVQSIAALDALIGRKTGIPETVNGQWELQHRYVNFTRSGISISLMYVNAADAQQTIVGVINLISNPQYMMLSFEQSYEGTIQQFDGLNFYITENINKPVALWQGDDKLLLFSGRTSQEEVTSLLRTIIREIGE |
Ga0243852_100000176 | F096287 | AGGAG | MQRIQKRRAGQRQTQNALIGLLSAVSMTRIGLTQLLPLCGSAAWWLSAACMLPGLCVYGALRLLLRHTHTRTLTDCARKLLGNFGGILIMLTLTLPLLLDGIASLTALITFFTEGIGARGSQFTLTLLTAAVMLIALNRDGLPRGVYLLRHVLLVAAAIIAINALLDAHPDGIVPLLGEGVPPLLSGIRSAWGMSWMLLLLLEFPAEEGTRRTPVMFVALLPCPVILLLLSLAIPPELTVPGRSLASRLALPTLFLQPAVRTLAQCLLMMTLFLSIAGSAQLAARFLTSSCQKPKKWVPYALIGLLTLTQLFDISRLWRVLTAFTAWSLAPGVLLLLVLTIARLCRREKA |
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