NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0243803_100511

Scaffold Ga0243803_100511


Overview

Basic Information
Taxon OID3300029420 Open in IMG/M
Scaffold IDGa0243803_100511 Open in IMG/M
Source Dataset NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 044_10_31_stool_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58764
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (84.48%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Source Dataset Sampling Location
Location NameUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097172Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0243803_1005113F097172AGGAGGMKKNVFKKLMCAVLATACVATAVVPAMADDVVTAEAATKKVTSAYRYHIDGYDKKGYPIDGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGEPCYESYVKFKAPKTGKYVVTLNNLQGTDDKSLKSLSCSLCEIAKTGKKYTLSGFEPDCNTVGKYDTLYENNYLARLRTILDNYKAEHPEYADVIEYDYNDYTDFVNKRPVDKIKFTTRLKKGQTYVFLINNALGKTTCKPYFTTHGSDEQSCLYNTNYLKAYSFDMNIEYRK
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