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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300029435 Open in IMG/M |
| Scaffold ID | Ga0243745_1005642 Open in IMG/M |
| Source Dataset Name | Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 027_10_29_stool_2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Institute for Genome Sciences, University of Maryland School of Medicine |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6210 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Baltimore | |||||||
| Coordinates | Lat. (o) | 39.28846264 | Long. (o) | -76.62594594 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F097172 | Metagenome / Metatranscriptome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0243745_10056423 | F097172 | AGGAGG | MKKNVFKKLMCAVLAAACVATAVVPAMADDVITAEATTKKVTSAYRYHLEGCDKNGYPVSGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSNVKSVSKEKGKPEYVTYVKFKALKTGKYVVTLDNLQGTDDKTLRCMMYCDFYQVSKTGKKYCLNSIEDSDTVGKYDTLYENNYLARLRTILDNYKEEHPEYADVIEETYSDETDFVNKYPIDKIKFTTKLKKGRTYVFSVDNIGMQKAVPPYFTTHGSNEQSCLWGGNYLAAYSFDMNIEYRK |
| Ga0243745_10056424 | F097172 | AGGAGG | MKKNVLKKLMCAVLATACVATAVVPAMADDVVTAEAATKKVTSAYRYHIDGYNKKGYPASYSKASFYKDLNSLPAVKTGKTTINVPAVTSSVKSVSKEKDNPEYESFVKFKAPKTGKYVFTLNNLQGTDDKSLKCFSGGIYKPVKNGKKYTLEDLYPDEVGDYTTLYENNYLARLRTILDNYKAEHPEYADVIEETYSDETDFVNHRPVNKIKFTTRLKKGQIYVFVIDNRGMAKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYRK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |