NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167332_1006028

Scaffold Ga0167332_1006028


Overview

Basic Information
Taxon OID3300029446 Open in IMG/M
Scaffold IDGa0167332_1006028 Open in IMG/M
Source Dataset NameBiosolids microbial communities from sewage treatment plant in Sweden - SWESTP13 - Kappala-digested 114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Gothenburg
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4931
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Biosolids → Sewage Microbial Communities From Wastewater Treatment Plant In Sweden

Source Dataset Sampling Location
Location NameSweden
CoordinatesLat. (o)59.355554Long. (o)18.227079Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045729Metagenome / Metatranscriptome152N
F088844Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0167332_10060288F045729N/ALQVITNKELNSTLLAFLEGLDYFYPATKPLYQLLYDKGFRSIEVNDLQRFTIVSETELRFKPAKNNRYRTFLISDFPSDFIAAIRNHSPKYISISCNTMRYTFNNLYKYRKVFSGNKAISLHLFRYNFCRKLFDSGETNEQIAEKLGEIDLSNLDSYLFADIYRL
Ga0167332_10060289F088844N/AMRSMTKFDDYFMKKGRIVSRETIGQNSEFIIYRVIGDNWKIERASKFFNDFYKNVNFRVSFLLCNVVIVRLREKNLCPYCFDYFENLTQIYKHLKRWHN
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