NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167332_1007880

Scaffold Ga0167332_1007880


Overview

Basic Information
Taxon OID3300029446 Open in IMG/M
Scaffold IDGa0167332_1007880 Open in IMG/M
Source Dataset NameBiosolids microbial communities from sewage treatment plant in Sweden - SWESTP13 - Kappala-digested 114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Gothenburg
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3951
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Biosolids → Sewage Microbial Communities From Wastewater Treatment Plant In Sweden

Source Dataset Sampling Location
Location NameSweden
CoordinatesLat. (o)59.355554Long. (o)18.227079Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023356Metagenome / Metatranscriptome210Y
F048287Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0167332_10078802F048287AGGAMYNKAVLLQTLQQVRLKVIDTLKLMLSEYEVSPESSLRVQPASYEVATGEKVEYPLFRNKAGTFYGSKAYLNTENWNLTLKPLPAGTRGVGAFLQFSVPKNYYGSNYFSVGEAGTRAALKKVEGELDQSGVFTNLEEAELSRVDTFKNIEPEEPFSSYFSLFSLLKARKAQQRGYGTTFLVSNSSQEFCIYDKLQEMREHDLETSNLPETMRFEHRALKKEKVRSLYGFTRVSELFHGGYEVVKEKQVESWKNSLFSFSTEEVVVLGSKQLEQEMKVFQEKFGSNWFQYFLRSYGAYSLAKFAGKEVVRAALENLNSERTKVWRTMKLLEEAERELLVLKQEEGSSKTLGELYEELRGKVCELE
Ga0167332_10078803F023356AGGAGMSENSLRKAVFERRVSAAEAEVMSTELEKSKVITLRVEEPLFRAIEAQAELWKVKPAETIRRILRFYFLPVALELKLRGESEKFWKGELTPEALREYMIFTLEATGKLSSSALFLKGEASRLSEALEGKLSEALEEEREGAEP
Ga0167332_10078807F048287N/AESSLRVQPASYEVATGEKVEYPLFRNEAGTFYGSKAYLNTENWNLTLKPLPAGNRGVGAFLQFSVPKNYYGSNYFSVGEAGTRAALKKVEGELVQNGVFTNLEEAELSRIDTFKNIEPEEPFSSYFSLFSLLKARRAQQRGYGTTFLVANSSQEFCVYDKLQEMREHGLETSELPETMRFEHRALKKEKVRTLYGFTRVNELFHGGYEVVKEKQVESWKNSLFSFSAEEVVVLGSKQLEQEMKAFQEKFGSNWFQYFLRSYGAYSLAKFAGKEVVRAALENLNSERTKVWRTMKLLEEAERELLVLKQEEGSSKTLGELYEELRGKVCELAGRN
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