NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183755_1000208

Scaffold Ga0183755_1000208


Overview

Basic Information
Taxon OID3300029448 Open in IMG/M
Scaffold IDGa0183755_1000208 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33665
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (78.57%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_023
CoordinatesLat. (o)42.1735Long. (o)17.7252Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004603Metagenome431Y
F013531Metagenome / Metatranscriptome270Y
F019114Metagenome231Y
F048285Metagenome148N
F091841Metagenome107Y
F097272Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0183755_100020810F004603AGGAMIFSININGSIVDWCYTINNQEKQYHQTWIPKIRDIQIITKELNGLTVSEVRKLILEDIQPDIQMVRDNTNKKARARRQKNV
Ga0183755_100020812F048285N/AMKIDPIQLEQATAFILETNKYIYEQAKELATQHLETEDNKNFKARVKRYEPESKETLLHFADEVTAWAECEKNYPLMDFIDKFFKTKKGY
Ga0183755_100020816F019114GGAGGMKQLRDRMMSVRDQYYKSRRKRGFTAFWFSSPLHTILVLEVAIADASSKSINFEAIVKLLPSSMGSRSTVATVLEDFVARGYMCKKVGKDKRKRDYIMCPGAMKLLNEWFVERQRSLKAV
Ga0183755_100020820F097272GGAGGMDLTEFGLDKIEAGESSGGGDRVKPGRYNFEYAGSEMIEGKNGWKALKIHFDVEGEIIKVSHAFTMAHNNDKPVEIGRESLVKMLNAMGVASMKNSDELLGKKVEGELVVGEKGYLEVKDDFGNGWKAYGTTATKENVDPKDVLPKEDKEEMFPSDVEDEDDLPF
Ga0183755_100020823F013531GGAGGMVNEKKKEQPLLSFQDKDGNPREIFERDLTDATAPLVEEISRDLGAEKQLMEAYELATKTVHHMEAVRKNITNTLEKLEKELPPYKKPIKIEGVTKEIN
Ga0183755_10002085F091841AGGAGGMEEYKIIDWAYNRMFPNKTFKSFDDGIAFVHERFNQDELDEIFVVPSNTKCYANGYWSTM

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