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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300029448 Open in IMG/M |
| Scaffold ID | Ga0183755_1000556 Open in IMG/M |
| Source Dataset Name | Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 22453 |
| Total Scaffold Genes | 37 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (78.38%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mediterranean Sea: TARA_023 | |||||||
| Coordinates | Lat. (o) | 42.1735 | Long. (o) | 17.7252 | Alt. (m) | Depth (m) | 55 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003361 | Metagenome / Metatranscriptome | 492 | Y |
| F006940 | Metagenome / Metatranscriptome | 361 | Y |
| F006971 | Metagenome / Metatranscriptome | 361 | Y |
| F022417 | Metagenome / Metatranscriptome | 214 | N |
| F027815 | Metagenome | 193 | Y |
| F028777 | Metagenome / Metatranscriptome | 190 | Y |
| F050395 | Metagenome / Metatranscriptome | 145 | Y |
| F081225 | Metagenome | 114 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0183755_10005561 | F081225 | N/A | MMVGFIGTVVSIVGVDMVNANNRRDFKAEEYDLYDVRKARPFWSQVCKANEWQVIKDEEDFAEDYVCKIYNNLYVMELQVVGYWHNFDIQYISNLFISASKVDNLKKKAQEKNTKAGLIFLNCVPNRFIGIDVERIIESYKVTTSSGEKSYKIPIQHIHFLYKELLGTNFCDCLENHIEIMKKSHGRIPMAQRKENWRGINGICC |
| Ga0183755_100055615 | F003361 | N/A | MKLTLNGALDLSRSINSQTIWNKRSTDYFNELAKELKQDSLNALSNNPSPRSQAGRGNKNTGATRRSVFTAKLGNTNRLRMSEGFKLATDKQYAPFIHGKPIYRGFSPVKKTRPFFPPYQEGSSLAKWAKRGQPKMNPFLVARAISKRGLKMKPFIGGVVYEKQKEIKDRGQEMLELIARDIARSVR |
| Ga0183755_100055620 | F006940 | GAGG | MKRLSMDDISNAPSLPEKEIEIPEWDATVLVTGLTKADAVEINELSEKDGIKDEVLFEKHLLLKGLKDPQLDDLEQVEEFYSKATPSIVDKVLIGIYRCMAWTKEDQASIASEFPE |
| Ga0183755_100055635 | F050395 | AGGA | MYPLKRKNKFNWAYKFLYWNGEENIVHLYTIETKEGFQVAESAAWGNATFDGCNNMKYIGKNKMEVENGTNA |
| Ga0183755_100055636 | F022417 | GGAGG | MAQMPKFLEDYTTVDELINKMNTEYPECRLIAEMIGYGDDWVIFKSSFYETKEDTEPKAVAYAKQTSKDHNSWFEMANTKANGRCLRIVFSESTLAEEMIGIAPSKDAAPEKSNLDKKVEALEAEGLVTDISQKAQAVMNSIKDFAMDCTAQDLDKARLYTASALTELGIRKEDVSITNLQAVKDKIQDIANSEKSA |
| Ga0183755_100055637 | F028777 | GAG | MLGLFARNKHSFTEMLFLEKDISEFRKIRYILEVEGRICSLDPEFSTSGNLRKAVHRLNRDYNSKIYKDECNCNFKVKGKLNMDGTPRKH |
| Ga0183755_10005564 | F006971 | GGA | MIYQKIEYKKHQKVKFVIPTDLRIIDPQTKKILWKYGTIQLFANNKISAWVLENNTKEPIRISLFCILPVH |
| Ga0183755_10005566 | F027815 | GGA | VDSIDKDFILDDNMFSDNPVFVDISQEFEDDCGDACKI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |