NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183755_1000588

Scaffold Ga0183755_1000588


Overview

Basic Information
Taxon OID3300029448 Open in IMG/M
Scaffold IDGa0183755_1000588 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21687
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (76.74%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_023
CoordinatesLat. (o)42.1735Long. (o)17.7252Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031151Metagenome183Y
F042374Metagenome158Y
F059457Metagenome134Y
F065673Metagenome / Metatranscriptome127Y
F091013Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0183755_100058810F031151N/AMIKHFEKFNDCGKGLLPLSFSHLNEFAFYRERWALRRIFGYQFPSGASAERGSSVESGLNMVLNGMSVKEASEKMIAEYDANCLRITDPKIDDERANLVPLLELGASTFQQYAFRWDLLNYQKKVELEINGIPFIGYTDFHFEDKNTKEDFFIDLKTSKNLPLQISISHAMQQAIYQRATNTKQILWYLKTPTKTKGAEYRAMTLDDYSRPMKICEHILKVMANYLKKVNNADDVRDSLIPNPDNWIWKEENVLKARKEVWGY
Ga0183755_100058811F065673AGGAGMSDKLITDEDIADIDRVKEQAIAKHMSDIKVMSKLVLSLNEYIIRFGRTSNIHDQCFDLKAQVIKNRDHLQDWVNQI
Ga0183755_100058814F091013N/AMIKNEIPLNKYVIHCKETKYYNVNISAKSYEDAETKWQSIAKKRDYITLHKELEVISVSWEGVNKND
Ga0183755_100058817F042374GGAGMKQSIIIKSFLILSILGAVSSCSTMPIVDSRGKSSANIKGDMNRFHDDYYTCKSLVEDQTNTGWEIGKNIYNNLRWKVLWLSPKLNTRKDFINRCLEGRGYNVINK
Ga0183755_100058818F059457GGAGMIEEPKKIGNTELYTVRVLNMSVAKYYGVTKEYTEIVVQARELNKKELAKNKEKAELNLYYGVRYLLNKLVLRKLEDELDKEIEKLKGVK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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