NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183755_1000729

Scaffold Ga0183755_1000729


Overview

Basic Information
Taxon OID3300029448 Open in IMG/M
Scaffold IDGa0183755_1000729 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19316
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (54.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_023
CoordinatesLat. (o)42.1735Long. (o)17.7252Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020902Metagenome / Metatranscriptome221Y
F022423Metagenome / Metatranscriptome214Y
F039873Metagenome163N
F040134Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0183755_100072910F039873N/AMNDIAQIREQAFIRAGNVCEWANCEDNKWLELAHIKDIGMGGNKNRKYNLDNTAVLCKWHHDIYDGRQRMGTKVAYRELLQGYLNRWSNVT
Ga0183755_100072918F022423N/AMQDINFISQTVQSMTESVTHTETLHKIIGTANQYAMTMKFPLDKTQWTDEQLNRYFSMIEKLVKMPVEYTQADFDSMSIEEKLEAAGIQAEEITEGVQQAGDMVGGIVNKMEQQNKYRDDLKCPCPNQLMVWDNRRNKKSDKSPDFVCSGKSPMDCPMHTGKWRKSWWLDNTDVPQEWNLDGEQTTA
Ga0183755_100072920F040134AGGMLNIDTKSNYYIQSIEYSGLGDIPHFILVNKEGDFKLVPVEIGIHNLRKLLGLE
Ga0183755_100072933F020902AGGTGGMQDEYDVAFWDMMYDEFGMQDELDVLSESVENIIYPVEGIIIFITKDFYNDQR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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