NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183755_1003258

Scaffold Ga0183755_1003258


Overview

Basic Information
Taxon OID3300029448 Open in IMG/M
Scaffold IDGa0183755_1003258 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8189
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_023
CoordinatesLat. (o)42.1735Long. (o)17.7252Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006222Metagenome / Metatranscriptome378Y
F087221Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0183755_100325810F006222N/AVPRVPTTNIINNPKRYGYDVRVDTLLLRSAVGPGREMQIQSSDVQEGQINVKQNPEDFTSNLGRIYSRNNFTGGQGLDTAHR
Ga0183755_10032589F087221AGGAMSTTIGNLVDRVYREYLEPMEDIVSYSYLTSDIDANATDIIYDDNLLSVEEEDALDAGTIIEIGKELMYATALNTVTNTITVTRGARGTTAASHSAGDLIKITPPFPRINVFNAVKDQIENLYPTLYAVEVQTIASAAGYVALEGADDSRIVAPLAAVSQYQSLASGSETTVQFRGVAMELIDVPTSVTASGKVVQFAGINNGVNVHVTFKKKFGEVANEASTLAEIGLETEYEPIIMAGVAAQMISGKDIPTYTADYITEQMAVSNYPVNSSSNIRNSLLQYQQVLINQARKDLRARYPEPVSVNSVVYPSA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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