Basic Information | |
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Taxon OID | 3300029448 Open in IMG/M |
Scaffold ID | Ga0183755_1003345 Open in IMG/M |
Source Dataset Name | Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8047 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (90.91%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea: TARA_023 | |||||||
Coordinates | Lat. (o) | 42.1735 | Long. (o) | 17.7252 | Alt. (m) | Depth (m) | 55 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F008925 | Metagenome | 326 | Y |
F012581 | Metagenome | 279 | N |
F013187 | Metagenome | 273 | Y |
F021207 | Metagenome | 220 | Y |
F054940 | Metagenome | 139 | Y |
F105326 | Metagenome | 100 | Y |
F105336 | Metagenome | 100 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0183755_100334514 | F008925 | AGGAG | MTTKSKPTINAVTLNLINKLKKIDDTINEGAWEYINIGDVIRVQDAFAEVISYYDLKKEGGVHDYGADKGKYQQFWHSDYVCHTNPKAFNPSKVEEDDE |
Ga0183755_100334516 | F012581 | GGA | MAKYTLYAKRVYYYRKDINAQDMKSAEKRGADYEADDNPERLFEPSGTEFYITSIEESDD |
Ga0183755_100334517 | F013187 | GAGG | MPTKKIKKKPRKNTWVYIYGDEMLEIWEHFGIDFPNPDDRMKLKFVKYETRDMING |
Ga0183755_100334518 | F105326 | GGAG | MEQRRNLTPKEHWELHQSLWNMLGCDMQLKHKNKNTVVYVDRKSKRQYTYSALGFIEEKRYANKKD |
Ga0183755_100334519 | F021207 | AGGAG | MSKRFKQVNIQQFAILVQEVDISKYSQEEYVDIIEEIYMTIFRHNTDGDFVIPTMPNEEGNWKVHKSSTTKEEVMKLINEGRVTWNKDVI |
Ga0183755_100334521 | F105336 | GGAG | MKLRQEQITRAEQILSDLERKVEEMEQQDYITYDLGKDLQNISFMINMLREEIKDE |
Ga0183755_10033455 | F054940 | GAG | MNLLEDEIKELIKERYYEYLEEGYESFEAMELAKRDVLETKEVEIDAYNKIYDSSIEVD |
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