NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183755_1003345

Scaffold Ga0183755_1003345


Overview

Basic Information
Taxon OID3300029448 Open in IMG/M
Scaffold IDGa0183755_1003345 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8047
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (90.91%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_023
CoordinatesLat. (o)42.1735Long. (o)17.7252Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F012581Metagenome279N
F013187Metagenome273Y
F021207Metagenome220Y
F054940Metagenome139Y
F105326Metagenome100Y
F105336Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0183755_100334514F008925AGGAGMTTKSKPTINAVTLNLINKLKKIDDTINEGAWEYINIGDVIRVQDAFAEVISYYDLKKEGGVHDYGADKGKYQQFWHSDYVCHTNPKAFNPSKVEEDDE
Ga0183755_100334516F012581GGAMAKYTLYAKRVYYYRKDINAQDMKSAEKRGADYEADDNPERLFEPSGTEFYITSIEESDD
Ga0183755_100334517F013187GAGGMPTKKIKKKPRKNTWVYIYGDEMLEIWEHFGIDFPNPDDRMKLKFVKYETRDMING
Ga0183755_100334518F105326GGAGMEQRRNLTPKEHWELHQSLWNMLGCDMQLKHKNKNTVVYVDRKSKRQYTYSALGFIEEKRYANKKD
Ga0183755_100334519F021207AGGAGMSKRFKQVNIQQFAILVQEVDISKYSQEEYVDIIEEIYMTIFRHNTDGDFVIPTMPNEEGNWKVHKSSTTKEEVMKLINEGRVTWNKDVI
Ga0183755_100334521F105336GGAGMKLRQEQITRAEQILSDLERKVEEMEQQDYITYDLGKDLQNISFMINMLREEIKDE
Ga0183755_10033455F054940GAGMNLLEDEIKELIKERYYEYLEEGYESFEAMELAKRDVLETKEVEIDAYNKIYDSSIEVD

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