NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183755_1004644

Scaffold Ga0183755_1004644


Overview

Basic Information
Taxon OID3300029448 Open in IMG/M
Scaffold IDGa0183755_1004644 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6529
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_023
CoordinatesLat. (o)42.1735Long. (o)17.7252Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010277Metagenome306Y
F031295Metagenome183N
F050005Metagenome146Y
F098051Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0183755_100464410F050005AGGAGGMYNKTNYPLYHEFKPIKIGNVLLNTSVDDILDQEIEETNIIINKLKDINQFLEV
Ga0183755_10046444F098051GAGGMDKLKLKDLDQLKEWVDQMYWDFDRLSSSGQETLDKIAEKLGMESNADVENRINRNIADLQERNPTWTREQVYTEALKLG
Ga0183755_10046447F031295AGGAMVRAEEKLHDVISSLQDIVNNWNRRGMKKIALENMINDLEVVDAELHDLKLPPITDDIQLDNRVCMFYVINQLKDMVTEKDDEQKIIQLTEFYNQLIFNLGINALHNHKNDWEDR
Ga0183755_10046448F010277GGAGGMSKALKDKLEEVELFVGKQLQDYTNEQVIQKVRKEFGLQMYVDHAEELLLEFQQEVNMERMQSW
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