NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183755_1005365

Scaffold Ga0183755_1005365


Overview

Basic Information
Taxon OID3300029448 Open in IMG/M
Scaffold IDGa0183755_1005365 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5952
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_023
CoordinatesLat. (o)42.1735Long. (o)17.7252Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015849Metagenome / Metatranscriptome251Y
F049926Metagenome / Metatranscriptome146Y
F074769Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0183755_100536513F015849AGGAGVTGIIDNSSDDARKQWCDLLHAAWMYHQQKVKDDQSPILGAQPSDDQMFHMGCSVAIQDAIALIQQMEAYGYFAEDDSEEGEELPQHKRGPAG
Ga0183755_10053656F049926AGGAGMKIPEAGTTMGKCTFCKDYIVQGDTNRAKHATVKSGHWLCGDCVIGMKDVVIGAFMDYHEEAEQEKKELLAQMEKYGWAVNPDTGKLQKL
Ga0183755_10053659F074769GGAGMGNLADKKRLREQAGEKIHKGESVISEKDEMMFIPFIQSGNPDEARPWLYKGYYRMPDGAINMELKRMEGQIELKVESIDNYREYIGEAVGGFVKKIYEQSPHDAETISMDKHETEVDLLKKEIIRLQLDAENANQVKEEAKAVLEKMSEQRGMTRE
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