NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183755_1005858

Scaffold Ga0183755_1005858


Overview

Basic Information
Taxon OID3300029448 Open in IMG/M
Scaffold IDGa0183755_1005858 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5613
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (19.05%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_023
CoordinatesLat. (o)42.1735Long. (o)17.7252Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024093Metagenome / Metatranscriptome207Y
F035957Metagenome / Metatranscriptome171Y
F066695Metagenome / Metatranscriptome126Y
F084085Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0183755_100585810F035957N/AMSKYYKDCTLEEMFEHHDHTYMMSDDNRAYENGRHQRDIMYAKVKEQGGWTKELVDLYNKYAPEGMFQMDYDFLTNKAG
Ga0183755_100585814F024093GGAMRNSMAVIKQMDIVAEEIATDTIEQIYQDCDWQIGQFLPEACEGDEYIEAHSYLVRTVARHIANKLDVTTNKYYDE
Ga0183755_100585818F066695N/AMKELLTDDIITNALNNDGIMEEPDAPWLLEYITDEYGGSLDTTTDWCDKQHGLKIYSESTYDGYDIYWCTHDERPYVSQDGFYYEDYTEWSERTLNELTSGAEVWIEPHVWEDMEYEFNHSLEQWWTDVYEDLFNDKKDELLDSGDYYEDEENK
Ga0183755_100585821F084085GGAMMCKDVMVTLLSLIEKEMKRRIEHSYFESESDKWSKFHDYIREIRLTINKGGIK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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