Basic Information | |
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Taxon OID | 3300029457 Open in IMG/M |
Scaffold ID | Ga0244117_102977 Open in IMG/M |
Source Dataset Name | Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001872-19 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Beijing Genomics Institute (BGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3637 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China |
Source Dataset Sampling Location | ||||||||
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Location Name | China: Shanghai | |||||||
Coordinates | Lat. (o) | 31.2123446 | Long. (o) | 121.4684853 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F078006 | Metagenome | 117 | N |
F080673 | Metagenome | 115 | N |
Protein ID | Family | RBS | Sequence |
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Ga0244117_1029773 | F078006 | AGGA | MLNQALAGRKEYHDRTCADMVRGRFPAPWHNLNINDMGDNILRKAAEELKKAGCRVFAWKDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMNVAYSRAYIPSCGSGSGCCVKEEATFDLETALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI |
Ga0244117_1029778 | F080673 | N/A | MDEIELLRLQDEALSYLRDNITKDEAYYILTTDKDIIGILIADKKDGSKRIKILDAEYTVENDDMLLLFDTDGIIDECLLVASYIGVNMYFRRQDVNAILNNINREKVMKYPYIAIQLDNIQTVEKRRVVFEITGHRMDDNKERIDFMFIYFMARLCV |
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