Scaffold Ga0244053

Basic Information
Taxon OID	3300029481 Open in IMG/M
Scaffold ID	Ga0244053_100271 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001806-13
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029481 Open in IMG/M

Scaffold ID

Ga0244053_100271 Open in IMG/M

Source Dataset Name

Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001806-13

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	54943
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	50 (89.29%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	1

Scaffold Components

Scaffold Length (bps)

54943

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

50 (89.29%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Source Dataset Sampling Location
Location Name	China: Shanghai
Coordinates	Lat. (^o)	31.2123446	Long. (^o)	121.4684853	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

China: Shanghai

Coordinates

Lat. (^o)

31.2123446

Long. (^o)

121.4684853

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F097172	Metagenome / Metatranscriptome	104	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0244053_10027135	F097172	AGGAGG	MKKNVLKKLMCAVLAAACVATAVVPAMADDVVTAEAATRKVTSAYKYHIDGYDKKGYPIDGFSKTSFYKDLNSLPSVKMGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCLNIYICRIAKNGKKYFLEDDLYPDTVGNYGDLYENNYLARLRTILDNYKAEHPEYADVIEYDYNDYTDFVNKRPVDKDKFTTRLKKGHTYVFIIDNSLGKTTCKPYFTTHGSDEQSCLYNTNYLAAYSFDMNIEFRK
Ga0244053_10027136	F097172	AGGA	MKPGKVKMSKQGNVYVGKSSKSFPFFLDVFQNGSIYKVKGPKDFLSAAYSNIFYLWNPKEGFIMKKNVLKKLMCAVLAAACVATAVVPAMADDVITVEAATKKVTSAYKYHLEGYDKKGYVMDGFSKASFCKDLNSLPAVKTGKTAINVPAVTSSVKSISKEKRNPRYKSFVKFKAPKTGKYVFTIDNLQGTDDKSLKCMLSGDLCQIFKTGKKYYLDGVEDSDTVGKYDTLYENNYLAKFRIIFDNYKAEHPEYADAIDETYNDESEYVSKHPVNKIKFTTRLKKGQTYVFVIDNRGMAEPCKPYLDDFGSDHQSCLSGGNYLKAYSFDMNIEYRK
Ga0244053_10027137	F097172	AGGAGG	MKKNVLKKLMCAVLAAACVATAVVPAMADDVVTAEAATKKVTSAYRYHIDGYNKKGYPASYSKASFYKDLNSLPAVKTGKTTINVPTVTSSVKSVSKEKDNPEYESFVKFKAPKTGKYVVTFDNLQGTDDKSLKCFSGGIYKPVKNGKKYTLEDLYPDEVGDYTTLYENNYLARLRTILDNYKAEHPEYADVIEETYIDYTDYVNKRPVDKIKFTTRLKKGQTYVFVIDNRGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYRK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244053_100271

Overview

Ecosystem & Geography

Associated Families

Sequences