Basic Information | |
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Taxon OID | 3300029492 Open in IMG/M |
Scaffold ID | Ga0244090_100919 Open in IMG/M |
Source Dataset Name | Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001845-95 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Beijing Genomics Institute (BGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 28557 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (91.30%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China |
Source Dataset Sampling Location | ||||||||
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Location Name | China: Shanghai | |||||||
Coordinates | Lat. (o) | 31.2123446 | Long. (o) | 121.4684853 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F041208 | Metagenome | 160 | N |
F101193 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0244090_1009191 | F041208 | GGAGG | MRKILAMLLSVMLLLTAAVAETSAPYAPETVLPLVANNRPYRDFARGAISSGEDAIEQAKAWLYLPLFVTNFSAKSEAVDWSAMRAEEGWYVTAYMRNTFVWLLMDEQGRVQAYDFDLLGNASLTYDGALPDNLDEAIASYIRRFADLNGFVEVADYAREEVTTFGDYAVAVTVQVTLDGTPYRFTMRLDMMAFTSVENANLHPTAAQTQRDILLLMRDNLAEKGVDITQTFFAVQADDADGETKLTGIASFPADAASDAIREQYGELGRYTLHYSGRASEAGIERVELSDWQETTATAQFPLALYALVDGKYLVPDGELAAGTAYLALDSMGLRGRNVIPLESITMLTRIRYARADGTFAESWVSSDTLTENDAAPAAPKREPIPTLESYQITLSGTAYTAFAINKVEKGYDAFADIAGTQTAVVDVLTSAAQGVIAEYGVDASDLLCRTVVEYGYRADKGCWQVDFTIPQRDMADDAYEVEVDDKDGKVTGLWGPQDGNG |
Ga0244090_1009197 | F101193 | GGA | MAQYNWTRCPHCGKLCKPSRFKAATVLVPIELVIFVVCIFFRNSMNDAIGWFAAYLLFVLLLFLPHYIYVRFFMPYETLSEDETRKFRDLQEH |
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