NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244086_100029

Scaffold Ga0244086_100029


Overview

Basic Information
Taxon OID3300029496 Open in IMG/M
Scaffold IDGa0244086_100029 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001841-89
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)157324
Total Scaffold Genes204 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (31.37%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Source Dataset Sampling Location
Location NameChina: Shanghai
CoordinatesLat. (o)31.2123446Long. (o)121.4684853Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074964Metagenome119N
F090484Metagenome108N
F099406Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0244086_100029137F099406N/AMAEVGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDYVNKKYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEESGGKVLESLGMVSTGVDSNYLDLSMFSGNSGTLDEASFGKVLDAYNNKITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANTDSAVGASEYDIEIQVGTFVVIQDKTYEAMNNMVTLSNTILSYLNFMAMPPKVVTTLANLPKGAHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGNDITQPLPTSGQFQSMSGDSVIVPKNSFIELSIWYINDKLVIRVGEQA
Ga0244086_100029156F090484N/ALEFSGRKKRHESDGYPQKSIRFFLLQIMKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFNELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIKDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVNKKDDFNFFLKDNTHILRFLNADEVVSEDGEILGIDRKKTKEEEARSLASAMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSAWSKEKVATVKAGLADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISVQSLPNISITVDNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL
Ga0244086_100029180F074964N/AMITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAICKTLEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGNTFVKFSLYSKVYKDNKVDKEKGIEAKTADWCTDNVVYGGEYKSFGFSTAETLETKKSAKWLVKETDEYKATYVAVKIKSYSIRTIAKCVSEYLTHESNQQ

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