NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244948_100100

Scaffold Ga0244948_100100


Overview

Basic Information
Taxon OID3300029540 Open in IMG/M
Scaffold IDGa0244948_100100 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from Shanghai, China - P049V6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)123346
Total Scaffold Genes112 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)93 (83.04%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Source Dataset Sampling Location
Location NameChina: Shanghai
CoordinatesLat. (o)31.2112312Long. (o)121.4647709Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072366Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0244948_100100103F072366AGGMLDILAIKADVYQLERQGKRLPVYRYLREVWQKEPPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRAKKRFLWQICYYVNAWATFYYIFGREITQDNVEQWKKTLFKEAKERYPDSMLFEFIPHAAQLDYVWFYRLTDEKRLQIRLEVGEWNLQKNDMDQAVQSDFDDAMTWYRDNGRKLLEAKNKTNN
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