Basic Information | |
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Taxon OID | 3300029573 Open in IMG/M |
Scaffold ID | Ga0245101_100581 Open in IMG/M |
Source Dataset Name | Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35515 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Beijing Genomics Institute (BGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 45958 |
Total Scaffold Genes | 36 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (80.56%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom |
Source Dataset Sampling Location | ||||||||
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Location Name | United Kingdom: London | |||||||
Coordinates | Lat. (o) | 51.5 | Long. (o) | -0.12 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F043413 | Metagenome | 156 | N |
F055739 | Metagenome | 138 | N |
Protein ID | Family | RBS | Sequence |
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Ga0245101_10058124 | F055739 | AGGAGG | MTEQQLREKLQFAYGTMPDATRAAFEHSLTHHRAPETHRNIGLSRMMRIVITAVLRALMLTAVGVAAARFFSVTDVHPAQDGTEGEYQAHYLALEERYDSDLLSVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRICGECDGKMYRFDPLDVYGGEFQSLLMLPDLGGTFDGEKYAAEGILLDETGQMPPEGRPIAWTIEINVLKAVWQTETMPDDLYEALSEEDDVAQYIREQAEQHMITLTDAGVEDYLLEMCGVGWDEIEQMSKADLLLRCGGFERAETYTVVFATEGNTQYVHPELSGLRIPLDGYTAVVDYVRASFLGGCVVLHCEAPNGTALPNGTALPDVWRIYRNDEQNPAGEAGWARASGYAGVPGGVVDVNQPSICLYFAPCADLTSLRIVPEGEAGFTLNLSGEKGTE |
Ga0245101_10058126 | F043413 | AGGGGG | MTERKLREKLQSAYGTMPDATRAAFEHSLTHHRVETRHPARMSRRMRTIVTLALMLMMLTVVGVAAAKLASVTDYPPPSGLTPEYMSHLVTLNEAYDGDLLTLSVNDLVFDGTTVEVAMNVQPKAGKQVFMDMEVTAECEGQTYTLEIEGCGGGDFMSGMFLPDGTDSWSDSPFAFDGVLWDDDMQSPPEGAPIAWTMTFELLQPVWEVEYLPDAQYQALLAGGADTLEAYVQNNWRKHIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEKLLSCGGFRRADTIIVPFTTDFADEYAHPELVGKRIGMGDYDLVIDNVNLSFMRANITMHYEFPAAYTEDEIRQMTNLPNAWRVYVNGQTEAGYDAYANFQQVTNGTYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGEKWDACHPDAEKGFTLELQE |
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