NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244907_100300

Scaffold Ga0244907_100300


Overview

Basic Information
Taxon OID3300029607 Open in IMG/M
Scaffold IDGa0244907_100300 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from Shanghai, China - P025V1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)68861
Total Scaffold Genes96 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (25.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Source Dataset Sampling Location
Location NameChina: Shanghai
CoordinatesLat. (o)31.2112312Long. (o)121.4647709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032312Metagenome / Metatranscriptome180N
F044555Metagenome / Metatranscriptome154N
F060985Metagenome / Metatranscriptome132N
F064817Metagenome128N
F105375Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0244907_10030056F064817N/AMNIKNLFNRFRKREPELSYSLNLIYLEDTKIVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0244907_10030058F105375N/AMKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADVLVNFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0244907_10030066F044555N/AMKTTNPSSRITISQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKNTISRFQAQYNIQEINPYLQNILQNPGDLVSLSQHHKR
Ga0244907_10030071F060985GGAMSNIDEEAKNNFTIEMRIFENYEKVKYEIIKVIDFLRHAGTNLGMCRIFDNQNHEFWHSVIKPWFQPERFGITHLWFTSGFSFIGYGEYHTIRGNRWMKTPIDKIAPIDKIDKEDRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD
Ga0244907_10030072F032312N/AMARIKDYDEDLSAPKILRRRDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYTFILVVWFIIFLYGLVS
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