NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311297_1417232

Scaffold Ga0311297_1417232


Overview

Basic Information
Taxon OID3300029625 Open in IMG/M
Scaffold IDGa0311297_1417232 Open in IMG/M
Source Dataset NameMildly acidic thermal spring sediment microbial community from Yellowstone National Park, USA - SJ3 Spring
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)969
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Thermal Spring Sediment Microbial Community From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameSmokejumper Geyser Basin, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.41595Long. (o)-110.95576667Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094112Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0311297_14172322F094112GAGGMSNVAVYKRGYNFMTLANGLGTKISLNFGLTTYNYPILAIFVYLYNTSSPASGYIKATITPLDEVATGYVGYSPTISYFIDPHKGAMYIPLAPHEYINITITPSAGANLAYDAFLYDWMGEN

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