NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222749_10416804

Scaffold Ga0222749_10416804


Overview

Basic Information
Taxon OID3300029636 Open in IMG/M
Scaffold IDGa0222749_10416804 Open in IMG/M
Source Dataset NameMetatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)714
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002889Metagenome / Metatranscriptome523Y

Sequences

Protein IDFamilyRBSSequence
Ga0222749_104168041F002889N/ALGGCSSKPLANESKKAATTLDKVQGKAQIVLNETSATDAALNAGGPSVYLVDGLHRYRLFFKTATSVEPAKEYTAEGVIAQKVIDEIGDPDQGKNGYPLQPSCERAVRMAWSNLPFDVLDGYASALRARVKRYPARPVFLVTRLQPVTSKDGAGSAGPKKGAGSKEKDIPEVSVAGDKQRAFLIEGPTVQPAPLWEPAGGTVRCKLVIGPEGRVSELETGMQLCEAVPWSQFRYQPP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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