NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206091_112590

Scaffold Ga0206091_112590


Overview

Basic Information
Taxon OID3300029655 Open in IMG/M
Scaffold IDGa0206091_112590 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_5-13C (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)631
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.3049Long. (o)-116.2547Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021903Metagenome / Metatranscriptome216Y

Sequences

Protein IDFamilyRBSSequence
Ga0206091_1125901F021903N/AVVAGPVDQSSITTFGTGIVNFQNKDQHSSLRVLPYAKLVTDSAQGYGPEVMDFYGQPGQLALGFSSTYAPGAAANAYEIWVDRPNSSPNQDSSFTFLFDTNAFIVIYQNDNVENKQVLFDARTGVPYAYGFYNTDQWNKVPDEATLWHIIDLSQAAGGVLYNGFPGENSTDQTAVAGAKFGYDAKFFESTKSIPCGHTASRGASPAYCPA
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Institute for Fundamental Biomedical Research
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