Scaffold Ga0222748_1031786

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0222748_1031786

Scaffold Ga0222748_1031786

Overview

Basic Information
Taxon OID	3300029701 Open in IMG/M
Scaffold ID	Ga0222748_1031786 Open in IMG/M
Source Dataset Name	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	830
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F036409	Metagenome / Metatranscriptome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222748_10317862	F036409	N/A	VDGVWQPAQRYADRLLDSIAYKCRFSIVTKDYLTLGVVSVHDFGKFHTLLFVHYDPKSKEWKGPIVEAPFNDWNIDGACPNFQANGERMIWSAGYDHGPDLISGSDGTGGLYDLFWLPTSELIAYYKARAGIG

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