NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0245206_100128

Scaffold Ga0245206_100128


Overview

Basic Information
Taxon OID3300029712 Open in IMG/M
Scaffold IDGa0245206_100128 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37316
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)154858
Total Scaffold Genes201 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)61 (30.35%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location
Location NameUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074964Metagenome119N
F099406Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0245206_10012810F074964N/AMITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKSICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVDDTFVKFALYSKVYKDTNADKEKGVEAKTADWCAENVVYGSEYKSFGFTTAESLETKKSTKWLIKENDEYKATYVAVKIKYYSIRTVAKCVSEYLAHESNQQ
Ga0245206_100128165F099406N/AMAEVGYNSKFEGLEVDSRLENVVQAAPGTSSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDYVNKKYVDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEESGGKVLESLGMVSTGVDSNYLDLSMFSGNSGTLDEGSFAKVLDAYNNNITLGKLAGDYYYLNYFLEGNDFENNFKLKIVFASFANADSAVGASEYDIQIQVGTFVVIQDKTYEVMNNMVQLSNTILSYLNFMAMPPKVVTTLANLPKGAHNIIANVASATDLYMTVSSEYVGREWQVRVNNTTGTDITQPLPTSGRFQSMSGDRVVVPKNSFIELSIWYINNKLVIRVGEQA
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