NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0245262_100003

Scaffold Ga0245262_100003


Overview

Basic Information
Taxon OID3300029738 Open in IMG/M
Scaffold IDGa0245262_100003 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37264
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)504240
Total Scaffold Genes486 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)450 (92.59%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location
Location NameUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050793Metagenome145N

Sequences

Protein IDFamilyRBSSequence
Ga0245262_100003249F050793GGCGGMRETGAIAPNDAKREKTMRKYEVDVPENVEMADVHAIQTRIKKHNLLTVALLIPLFAGCALRESSETLGGIVFVLSMVLMVLGFVSGRSDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGGAYRVQLGVLDEKTGAWENDEQDEVFPTLADVREYASQEGYEPMDVDFGQMTDEEFQQFLDRSRI
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