NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0243236_1011468

Scaffold Ga0243236_1011468


Overview

Basic Information
Taxon OID3300029783 Open in IMG/M
Scaffold IDGa0243236_1011468 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from healthy subjects in Hangzhou, China - HD-60_Run5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterZhejiang University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2341
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Source Dataset Sampling Location
Location NameChina: Hangzhou
CoordinatesLat. (o)30.0Long. (o)120.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032286Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0243236_10114681F032286N/AMVKWICQIVTPIRHRALVFDARLSAGNTANDTLVTGNTRSFCRLVCLCVKRQNVKSDSKRRSLPDSALFHADNRTAQKTISPFSLALILTFDFAALSERRSCPEVRSRRFVLLGALDAALRQRTYPIRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNANFHAYGQDRKRAE
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