Basic Information | |
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Taxon OID | 3300029787 Open in IMG/M |
Scaffold ID | Ga0183757_1000344 Open in IMG/M |
Source Dataset Name | Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 26187 |
Total Scaffold Genes | 47 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (70.21%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea: TARA_018 | |||||||
Coordinates | Lat. (o) | 35.7528 | Long. (o) | 14.2765 | Alt. (m) | Depth (m) | 60 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004549 | Metagenome / Metatranscriptome | 433 | Y |
F007401 | Metagenome | 352 | Y |
F073582 | Metagenome / Metatranscriptome | 120 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0183757_100034440 | F007401 | AGGAG | MDHQEILKQRDLLDAMLASRTNQYEKIECMKVMDSIYFKKQLPENVVLFPLQRIKRYVHRTSKQPSKKNL |
Ga0183757_100034443 | F004549 | GAGG | MDIKKFKSVAVAIDTYNLLKKLAALDDRSAGMEITHLVKQEAKKRKIDEK |
Ga0183757_100034444 | F073582 | AGGAG | MTILKEDYEAVFKEGFKLGNRLARAKINIMRASDSKSMGDEPMAEHYKEYAETWMKLAKNCGRRFTPPTAHSQSQPSIDLGDVEFLDHKYNDKPEDEDGYQEVQVGGSGN |
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