NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183757_1000721

Scaffold Ga0183757_1000721


Overview

Basic Information
Taxon OID3300029787 Open in IMG/M
Scaffold IDGa0183757_1000721 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16391
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (72.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_018
CoordinatesLat. (o)35.7528Long. (o)14.2765Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014446Metagenome263Y
F036434Metagenome170N
F069320Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0183757_100072111F036434AGGAGMDTSKYKSVATKLDTYNKAKLMADNTHRSIGAYISMVIDEAWKKQKPALKGKLKEVA
Ga0183757_100072123F014446N/AMNLSMRDWIWVGCIVAGIAFTNGMMSSRVTALESKIKDMDMLRIDARLSVIEVQVKEINQKLDKILSIN
Ga0183757_10007218F069320AGGMSIRLPDSPIRKIYRCNKCNNLSVNFWNSKHDRTYTVEEWLSVCEEGKESLRKILRPIAEDPKFFLD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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