NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183757_1001256

Scaffold Ga0183757_1001256


Overview

Basic Information
Taxon OID3300029787 Open in IMG/M
Scaffold IDGa0183757_1001256 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11271
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (25.93%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_018
CoordinatesLat. (o)35.7528Long. (o)14.2765Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024093Metagenome / Metatranscriptome207Y
F031892Metagenome / Metatranscriptome181Y
F033254Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0183757_100125613F031892N/AMKDTQFDIIVGKLDEYARETMRKKGPEYTMQDTDVLNNFKSTAKKLNVDPLVVWYAYFDKQVSSVAAHVSNEDLNKAEPMISRFGDIINYAKLGYALFVERDKL
Ga0183757_100125618F024093N/AMGAIKQIHIVASEIADDIIKDINKQCDWQVTQFLPDNSEGNTINEAHSYMVRTVARHIANKLDVNSNKYYDE
Ga0183757_100125624F033254AGTAGMSNTRKYTHEKLWSFADEHVIDGMIYSNDLGKYVTVEEYTDVYYGTL
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Institute for Fundamental Biomedical Research
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