NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183757_1001578

Scaffold Ga0183757_1001578


Overview

Basic Information
Taxon OID3300029787 Open in IMG/M
Scaffold IDGa0183757_1001578 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9625
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_018
CoordinatesLat. (o)35.7528Long. (o)14.2765Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052545Metagenome / Metatranscriptome142Y
F071138Metagenome / Metatranscriptome122N
F089399Metagenome109N
F103098Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0183757_10015782F103098GGAGMRDLVNLGIEFRQDTATSNVVDRTEDCGNGFGWSIIEWPNDSRAYCRYEFAVLRDGNICYDSGVTEDVVRGDWTMMEKLKCYVTDLNPDRLPS
Ga0183757_10015785F071138AGGAMFKVIVSDVECFGKFGYFTTRSVAFGKSPKQAWANLRKRGAHTVSGGHPEGYGGVPVLQMRRVEKDGEMLSEVWD
Ga0183757_10015787F089399AGGAMNFNEICLDAELTRDEIYGLAVGDETIFYTQDDEDIFKQEQESEYRRLKRIKQENAENYRKQVDADGIFQYNGHTDEVSLHSNQQAFVGAMVKEGLIEFDDKF
Ga0183757_10015789F052545AGGAMEKISVWAVLFRMSTESSVMIRTPFDAKTFKNSPDDQLDAGAWCLGRMGGSWVPAMFICGTQSEAEGIREELLERMHREE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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