NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183757_1001725

Scaffold Ga0183757_1001725


Overview

Basic Information
Taxon OID3300029787 Open in IMG/M
Scaffold IDGa0183757_1001725 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9060
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_018
CoordinatesLat. (o)35.7528Long. (o)14.2765Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F012581Metagenome279N
F013187Metagenome273Y
F029779Metagenome187Y
F105326Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0183757_100172516F105326AGGAMEQRRNLTPTQHWELHQGLWRMLGCDMKLKHKDRTKIIYVDKKRNIQYTYSALGFIKEKSYANKKN
Ga0183757_100172517F013187AGGAGMPTKKIKKKPRRNTWVWIYGDEMLEIWEHFGIDFPNPDDRMKLKFVKYETREMQDG
Ga0183757_100172518F012581GGAGMAKYTLYAKKVYYYRKDINAQDKKSAEKRSADYEADDNAERLFEPSGDEFYITSIEENED
Ga0183757_100172519F029779AGGAGMSDNIKTKYYIEKYKQLCEALVGIDATERYTHEDILSYVYNLKDTEEKFYDNKN
Ga0183757_100172520F008925AGGAGMTTKTKPKIDAVTLNLINKLKKIEDTINEGAWEYIHLGDIIRLQDASQEAISHFDLRKEGGIHDYGADKGKYQQFWYSDYVCYTDPKAFDPSKVEEEDDE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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