NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183757_1009236

Scaffold Ga0183757_1009236


Overview

Basic Information
Taxon OID3300029787 Open in IMG/M
Scaffold IDGa0183757_1009236 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2893
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_018
CoordinatesLat. (o)35.7528Long. (o)14.2765Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F013187Metagenome273Y
F023319Metagenome210N
F024676Metagenome205Y
F070656Metagenome123N
F104989Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0183757_100923610F023319AGGAGMSKKIKCQRCKNNKAYPEDMENRASNLLLCDDCYTELRYLMADYLNINLQEINV
Ga0183757_100923612F024676AGGAMRKEMYVIAMPYPFNTKLPDILEEDDGTIMYFKDKGEAKSFLQNLYDERQIHMQALIDDNIDIMRVQ
Ga0183757_10092362F104989GGAGMKGNNMTPREHWELHQGLWNIIGCDMQVYKQDSDRIIYIDKNSKWAYKYENGVIERKLQTNPDRRYR
Ga0183757_10092363F013187AGGAGMKKIKKKPKKNTWVWIFGDEMQEIWEHFGFPNPDPDDKMKLKFVKYETREMQDG
Ga0183757_10092366F008925AGGAGMTTKSKPTIDTVTLNLVNALKQMDDKLNEGSWEYINLGDVLRFQDVYNETIKHYDLKKEGGIHDYGADKGKYQQFYYSDYVCXXXXEEDDE
Ga0183757_10092369F070656AGGAGMSRKILTAVREASISIASCLDEPNDVSKKDLEHIQDQITKIENYLTPFYLEELEEIKNE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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