NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183757_1012246

Scaffold Ga0183757_1012246


Overview

Basic Information
Taxon OID3300029787 Open in IMG/M
Scaffold IDGa0183757_1012246 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2361
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_018
CoordinatesLat. (o)35.7528Long. (o)14.2765Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012581Metagenome279N
F013187Metagenome273Y
F105326Metagenome100Y
F105336Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0183757_101224611F012581AGGAGGMAKYTLYAKKVYYYRKDINAQDMKSAEKRGADYEADDNPERLFEPSGTEFYITSI
Ga0183757_10122466F105336AGGAGMKLRQQQITRAEQILSDLERKVEQMEQQDYITFDLEKDLRSLQAMLDDLREEIENE
Ga0183757_10122468F105326GGAGMEQRRNLTPKEHWELHQGLWYMLGCDMQLKYKDRTTAVYVDNKEKLKYTYSTKGFIKWFPIPKEDKDANKKD
Ga0183757_10122469F013187AGGAGGMPTKKIKKKPTWVWIYGDEMPEVWEHFGFTNPDPYDRIKLKFVEYQSETKQALLEEYDEN
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