Scaffold Ga0183757_1026943

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0183757_1026943

Scaffold Ga0183757_1026943

Overview

Basic Information
Taxon OID	3300029787 Open in IMG/M
Scaffold ID	Ga0183757_1026943 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1263
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Mediterranean Sea: TARA_018
Coordinates	Lat. (^o)	35.7528	Long. (^o)	14.2765	Alt. (m)		Depth (m)	60
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012581	Metagenome	279	N
F013187	Metagenome	273	Y
F021207	Metagenome	220	Y
F105326	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_10269433	F021207	AGGAG	MSKRFKQVNIQQFAILVQEVDISKYSQEEYVDIIEEIYMXXXXPNEEGNWKVHKSSATKEEVMELIKEGRVTWNKDVI
Ga0183757_10269434	F105326	GGAG	MEQRRNLTPKEHWELHQGLWNILGCDMQLKYRDRTTAIYVDNKAKLKYTYSTKGFIKWFPIPKEDKDANKS
Ga0183757_10269435	F013187	AGGAGG	MPTKAKIKKKPKKNTWVYIYGDEFLEIFEHFGFDFPNPDDRMKLKFVKYETKEMQDG
Ga0183757_10269436	F012581	AGGAG	MAKYTLYAKRVYYYRKDINAQDKKSAEKRSADYEADDNPERLFEPSGTEFYITSIEESDDEG

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