NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183826_1023748

Scaffold Ga0183826_1023748


Overview

Basic Information
Taxon OID3300029792 Open in IMG/M
Scaffold IDGa0183826_1023748 Open in IMG/M
Source Dataset NameMarine giant viral communities collected during Tara Oceans survey from station TARA_041 - TARA_Y100000052
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)981
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameIndian Ocean: TARA_041
CoordinatesLat. (o)14.6059Long. (o)69.9776Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064623Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0183826_10237481F064623GGAMEEVTVLNSIGGCASSQLFKIINGLGIESNRDHFHQGINFGRCKHSLYPPVYEEIEKAIFVMGDPVQSIISIFRRDMPVTHIENKGLPLHPTRTDNVEIHPQTKEIYRVHPQFVKKYSLEEYVRGGQDWFMTYEHIYNWTQRQTKYPVLCVKSDVQWKYGKEIFVDFLGQEKVPEQYVQRDRNSTIDLIPDDMKDEFTSILKDATE
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