NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183826_1043181

Scaffold Ga0183826_1043181


Overview

Basic Information
Taxon OID3300029792 Open in IMG/M
Scaffold IDGa0183826_1043181 Open in IMG/M
Source Dataset NameMarine giant viral communities collected during Tara Oceans survey from station TARA_041 - TARA_Y100000052
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)699
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameIndian Ocean: TARA_041
CoordinatesLat. (o)14.6059Long. (o)69.9776Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032858Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0183826_10431811F032858N/AMIMWDLLTNRKDIMKYFILEKSKYIRGHEHDMPANEMCKNGFTDLEKAEKAMAALQLLNHRPDMVSFIIVKEVDAWFTK
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