Basic Information | |
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Taxon OID | 3300029799 Open in IMG/M |
Scaffold ID | Ga0311022_13706348 Open in IMG/M |
Source Dataset Name | Metagenomes from anaerobic digester of solid waste, Toronto, Canda. Combined Assembly of Gp0238878, Gp0238879, Gp0242100, Gp0242119 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Toronto |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 848 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Digestate → Metagenomes From Anaerobic Digester Of Solid Waste |
Source Dataset Sampling Location | ||||||||
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Location Name | Toronto, Ontario, canada | |||||||
Coordinates | Lat. (o) | 43.5479 | Long. (o) | -79.6609 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F007409 | Metagenome / Metatranscriptome | 351 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0311022_137063481 | F007409 | N/A | MSQDKKVVVETKLSLSEEKNLGFLESIAKTNTEKITREILEGLSKDTGDSDSYDVKSGGEDSEDRPWRPSHAVFGKSAIKQSHLDNMGGRYFRDVSIVRADNGDRTPPAPEENEVVMFRSFFKAGLR |
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