NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134835_1001347

Scaffold Ga0134835_1001347


Overview

Basic Information
Taxon OID3300029825 Open in IMG/M
Scaffold IDGa0134835_1001347 Open in IMG/M
Source Dataset NameLiquor fermentation pit mud microbial communities from Luzhou, China - Meta-1-2-440-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChongqing University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28443
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (85.96%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Fermentation Pit Mud → Liquor Fermentation Pit Mud Microbial Communities From Chongqing University, China

Source Dataset Sampling Location
Location NameChina: Luzhou
CoordinatesLat. (o)28.88Long. (o)105.45Alt. (m)Depth (m).01
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072352Metagenome / Metatranscriptome121Y
F072355Metagenome / Metatranscriptome121Y
F080011Metagenome / Metatranscriptome115N
F088943Metagenome / Metatranscriptome109Y
F101100Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0134835_100134719F101100GAGGMKLVFRVESANEEIIRGGWYLLADSLAAAREVYPAHLFPSMTFIEVGKGLCVECNRRAVDALVER
Ga0134835_100134742F080011GAGGMTWDELEELRDRLSNILERERAEDGFSPIEEDYYILYRQAARRAVAGIDLDHSRDRDHYRTLQEIYDIVGEIYDIRSAKLRMAVQDRVVFKRDRERPENLTEEERDRYNMAISLGGHNAE
Ga0134835_100134743F088943AGGGGGMRGLSQSVIANEEHLVQIYRRTGDTQFTYSDIADLIPRGVMLRYTTPGIFVPARDPNGIPLKGGSRSRATVWRWHPRAAELCRRAIERDHRWENLAAGLTGGSECA
Ga0134835_100134744F072352GGAGGMSSKTGGAFAAVKHAPTVHHLPGCPNGCGEMLALDDGWQCPVCNWYRGYYRGERHP
Ga0134835_10013476F072355GGAGGMSIINITAITAAWHNLMFQLDMAKYHIDENGVADLQSIIFGVTGAVVALIVAVIVLGNLDTATQGTVCETSAYYALLTTVNQYGSTSITLLAIGVIVAGAAAILYIIRGSF
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