Scaffold Ga0134835_1031965

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134835_1031965

Scaffold Ga0134835_1031965

Overview

Basic Information
Taxon OID	3300029825 Open in IMG/M
Scaffold ID	Ga0134835_1031965 Open in IMG/M
Source Dataset Name	Liquor fermentation pit mud microbial communities from Luzhou, China - Meta-1-2-440-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chongqing University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1759
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Fermentation Pit Mud → Liquor Fermentation Pit Mud Microbial Communities From Chongqing University, China

Source Dataset Sampling Location
Location Name	China: Luzhou
Coordinates	Lat. (^o)	28.88	Long. (^o)	105.45	Alt. (m)		Depth (m)	.01
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F094051	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134835_10319652	F094051	GGAGG	MTNTGILGKVQIEGNWTQKRLILPVIQAALERTQLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGGGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMSLQQQAAAGALAANLNKLIAERLDTTPQTYNTTGDLGNWAAAGAKPTLAVGKMAAAMGVHQPTALVMGTLAGAYYVDAVGDKVAIANLAEWRGATSIHPTLNIPVFISTDIDKLDDTSGNRYVFGVCNTTPGVVTVLSKIKARQYDDPKLGAQVYQYDIWRSPFSNIQQTSGNLNLGVMRGLMKES

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