NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0245292_100281

Scaffold Ga0245292_100281


Overview

Basic Information
Taxon OID3300029853 Open in IMG/M
Scaffold IDGa0245292_100281 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37209
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)86962
Total Scaffold Genes118 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (22.03%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location
Location NameUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060985Metagenome / Metatranscriptome132N
F089054Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0245292_10028138F089054N/AMLTSGKFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQEINPWDKHSTYIRLKLREILKVNLTDITIIDIISLP
Ga0245292_10028143F060985N/AMIKVEKAKNNFTIEMRIFENYEKVKYEIIKVIDFLRHAETNLGMCRIFDNQNHELWHSVIKPWFQPERFGITYLWFHSGFSHIGYGEYHIIRTNRWLKTPIERINREDYIFGYWFPTYKKYIPYRIRILKLALKDLERIKEEYGKD
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