NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0245314_102152

Scaffold Ga0245314_102152


Overview

Basic Information
Taxon OID3300029871 Open in IMG/M
Scaffold IDGa0245314_102152 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37545
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16705
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (63.16%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location
Location NameUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078005Metagenome117N
F078006Metagenome117N
F085718Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0245314_10215232F085718AGGAGMVIEFDFEIYKNGDYDKVYLRDGKEPRVLCDNGKGDRPIVVMVEDDNANDYIILRYNEIGRRNINGKSSLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSRNIGGNIYLQGSSKSNVSYYVGRLEEDGCFDELCERIRVKRDRIYNMGIISLSDDKATV
Ga0245314_10215234F078006AGGAMLNQALAGRKEYHDRTCADMVRGRFPAPWHNLNINDMGDNILRKAAEELKKAGCRVFAWQDDTYNRGWSKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGPGCCVKEEATFDLEAALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI
Ga0245314_1021529F078005GAGGMVKAEDDGFEYGGKVIFYKEDDDNYEISVKNIEMNLMVEANTMANMDDRTFACLVSEVYKQKFTKAIMMSEDEDDEDN
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