NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311368_10032892

Scaffold Ga0311368_10032892


Overview

Basic Information
Taxon OID3300029882 Open in IMG/M
Scaffold IDGa0311368_10032892 Open in IMG/M
Source Dataset NameIII_Palsa_E1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4898
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000132Metagenome / Metatranscriptome1972Y
F008565Metagenome / Metatranscriptome331Y

Sequences

Protein IDFamilyRBSSequence
Ga0311368_100328923F008565AGTAGMNRLAIAATLLLLCTSFPASLEASHKVPRYLSKESSIDMSHMNRVFLGWVDLEPDAWALYGYTSRADWSDTIAALNAGFARSVQATYLPGRTITAAKDSENEISAASDLYIKFSDVNVDYENDHLVLSIHLIDLKTNSEIASIPARLYYGNASGIKNYLKAALDEVAKKLQVEVTGETQGKK
Ga0311368_100328926F000132AGGCGGMWIEKLAGGVVRVQTPIGPRYVMPSFLQRMQLLWMFRNFPILPHAVLSGRQQRMVDQLCSEQPFESMAYSGDGMEEAPVIGTVERRPAIGTAPLPPRRPVASEGSRGLPAEAQQQP
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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