NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311368_10301661

Scaffold Ga0311368_10301661


Overview

Basic Information
Taxon OID3300029882 Open in IMG/M
Scaffold IDGa0311368_10301661 Open in IMG/M
Source Dataset NameIII_Palsa_E1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1214
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099754Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0311368_103016611F099754N/ATLAISCHGCSYQMKHQVLTGAMLVLNVRQHPNGRSEGPARARVKWIQKLNAGAGTDYGIAVEFESAGNIWGISSPPEDWFPARQSKAVDLPNHFPSHSPNHPPNLGRELQLVTRTEPPSVPAHSEPVPPVSLFKKGEAAASLSPWFSDLMAGISNQIQVTVSEIAAATLANERARLLDEFRLQIQNEAAGTIERVIETSKEELARRGLKVLNEAAEATIRTSQESFRGAIEQDLENAKQRLSIQGNELDQRINGMATRTIEQLQRTIETSRVEGTSRFVSRLREQVAPVLEDAKAELQKLVASQAVFKEESQAMYARVTGELEKEVQAKLIQTRDELDKKSAAVLTECHEKLQELSQTFENVARDSIHTLIESATNQAQKNLEERAGKVSNNFAGDLEAHVRDY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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