NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311327_10098591

Scaffold Ga0311327_10098591


Overview

Basic Information
Taxon OID3300029883 Open in IMG/M
Scaffold IDGa0311327_10098591 Open in IMG/M
Source Dataset NameI_Bog_E2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2161
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002101Metagenome / Metatranscriptome593Y
F083948Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0311327_100985911F083948N/ASNDRTQYDVTDVSGKVEVAAHKNDVKITQGGALGKASKEGNSSQSGTVHEGQRATRDESTACGAAPRPGEASNPLNTKWIEIGGGAGAGVLVLCLLLCRSSGSSSVSPSQP
Ga0311327_100985913F002101AGGAMTTPVLTLPPPNPDVSSAKKKRVLLLDTSQTKRDLRADVMRKLGIDVDCAADVLEARCWWRADLYNLVLINVAGEADSRDKFCTDLRSATPPQRISFFVGGPEYLAAAPHSDAAPAEADADALHKEMVAALLAQASGSSSQRWGILEACKKISSVRSVSEARSRAIRETPRPSRWAEAIEQHSAPEATNPRPLFTTFATESAQPLATTETEREELL
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